Skip to main content
Ctrl+K

gretapy

  • Tutorials
    • Comparison of multimodal GRNs
    • Evaluating multimodal GRNs
  • API
    • gretapy.show_organisms
    • gretapy.show_datasets
    • gretapy.show_metrics
    • gretapy.show_terms
    • gretapy.show_genome_annotation
    • gretapy.get_terms
    • Data Sources (ds)
      • gretapy.ds.read_db
      • gretapy.ds.read_dts
      • gretapy.ds.read_metrics
      • gretapy.ds.read_imaginary_metrics
      • gretapy.ds.toy
    • Methods (mt)
      • gretapy.mt.lit_grn
      • gretapy.mt.correlation
      • gretapy.mt.random
    • Plotting (pl)
      • gretapy.pl.heatmap
      • gretapy.pl.links
      • gretapy.pl.ranking
      • gretapy.pl.stats
      • gretapy.pl.cre_to_tss_distance
    • Tools (tl)
      • gretapy.tl.benchmark
      • gretapy.tl.eval_grn_dataset
      • gretapy.tl.ocoeff
      • gretapy.tl.stats
      • gretapy.tl.cre_to_tss_distance
  • Frequently Asked Questions
  • Changelog
  • References

Index

B | C | E | G | H | L | M | O | R | S | T

B

  • benchmark() (in module gretapy.tl)

C

  • correlation() (in module gretapy.mt)
  • cre_to_tss_distance() (in module gretapy.pl)
    • (in module gretapy.tl)

E

  • eval_grn_dataset() (in module gretapy.tl)

G

  • get_terms() (in module gretapy)
  • gretapy
    • module
  • gretapy.ds
    • module
  • gretapy.mt
    • module
  • gretapy.pl
    • module
  • gretapy.tl
    • module

H

  • heatmap() (in module gretapy.pl)

L

  • links() (in module gretapy.pl)
  • lit_grn() (in module gretapy.mt)

M

  • module
    • gretapy
    • gretapy.ds
    • gretapy.mt
    • gretapy.pl
    • gretapy.tl

O

  • ocoeff() (in module gretapy.tl)

R

  • random() (in module gretapy.mt)
  • ranking() (in module gretapy.pl)
  • read_db() (in module gretapy.ds)
  • read_dts() (in module gretapy.ds)
  • read_imaginary_metrics() (in module gretapy.ds)
  • read_metrics() (in module gretapy.ds)

S

  • show_datasets() (in module gretapy)
  • show_genome_annotation() (in module gretapy)
  • show_metrics() (in module gretapy)
  • show_organisms() (in module gretapy)
  • show_terms() (in module gretapy)
  • stats() (in module gretapy.pl)
    • (in module gretapy.tl)

T

  • toy() (in module gretapy.ds)

By Pau Badia i Mompel

© Copyright 2026, Pau Badia i Mompel..