Tools (tl)

Tools (tl)#

Tools for benchmarking and analyzing gene regulatory networks.

Benchmarking#

benchmark(grns[, organism, datasets, terms, ...])

Run the benchmark for one or multiple GRNs across one or multiple datasets.

eval_grn_dataset(organism, grn, dataset, terms)

Evaluate a GRN against a dataset using multiple metrics.

Statistics#

ocoeff(grns)

Compute pairwise overlap coefficient between GRNs at all levels.

stats(grns)

Compute descriptive statistics for GRN(s).

cre_to_tss_distance(grns[, organism])

Compute the distance from each CRE to the TSS of its target gene.