Data Sources (ds)

Data Sources (ds)#

Functions for downloading and reading datasets and databases.

read_db(organism, db_name[, verbose])

Read a database file for a given organism.

read_dts(organism, dts_name[, verbose])

Read a dataset for a given organism.

read_metrics([remove_paired, verbose])

Read the GRN benchmark metrics table.

read_imaginary_metrics([seed, ...])

Read benchmark metrics for an imaginary method.

toy([n_cells, seed])

Generate synthetic MuData and GRN for testing and demonstration.